Wisconsin SARS-CoV-2 (hCoV-19) Genomic Dashboard

enabled by data from GISAID

Number of sequences by selected time period of sample collection.

Cumulative number of sequences by date of sample collection.

Proportion of all sequence lineages over time by sample collection date. Variants of concern are shown in red, variants being monitored are shown in purple, all other lineages are shown in blue.

Proportion of sequenced strains that are variants of concern (red) and variants being monitored (purple), over time by sample collection date.

Cumulative number of variants sequences identified over time by sample collection date.

Variants of concern have evidence of an increase in transmissibility, more severe disease (increased hospitalizations or deaths), significant reduction in neutralization by antibodies generated during previous infection or vaccination, reduced effectiveness of treatments or vaccines, or diagnostic detection failures.

For more information on these variants of concern visit CDC's Variant Surveillance or Wisconsin DHS Emerging SARS-CoV-2 Variants.

  • B.1.617.2 (Delta):
    • Alias: 20A/S:478K
    • First Identified: India
    • Sublineages: All AY sublineages
    • More Information
  • B.1.1.529 (Omicron):
    • Alias: 21K
    • First Identified: South Africa
    • Sublineages: All BA sublineages
    • More Information

Cumulative number of variants sequences identified over time by sample collection date.

Variants Being Monitored include variants where there has been data to suggest an impact on medical interventions or are assocated with increased transmission or severity but are currently circulating at low levels.

For more information on these variants visit CDC's Variant Surveillance or Wisconsin DHS Emerging SARS-CoV-2 Variants.

Proportion of sequenced strains matching the selected variant, over time by sample collection date.

Percentage of sequences identified as variants of concern by Healthcare Emergency Readiness Coalition (HERC) region, darker colors represent a greater proportion of variants identified. Hover over a region to see a breakdown of the variants of concern. Percentage is based on the number of sequences generated between:
to
Number of confirmed cases sequenced by county, darker colors represent a larger proportion of cases sequenced. Hover over the map to see what percentage of confirmed cases have been sequenced and the total number of sequences from a particular county. Confirmed cases by county are also available here.
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